Package: mrmhub
Title: Small Molecule Mass Spectrometry Data Processing, Quality
        Control, and Reporting
Version: 1.0.1
Authors@R: c(person(given = "Bo", family = "Burla", role = c("aut", "cre"),
    email = "bo.burla@nus.edu.sg", comment = c(ORCID = "0000-0002-5918-3249")),
    person(given = "Guo Shou", family = "Teo", role = "aut",
    email = "guoshou@nus.edu.sg", comment = c(ORCID = "0000-0003-3891-1494")),
    person(given = "Hyungwon", family = "Choi", role = "aut",
    email = "hyung_won_choi@nus.edu.sg", comment = c(ORCID = "0000-0002-6687-3088"))
    )
Description: MRMhub-QUANT, the quantitation and reporting module of the
        MRMhub toolchain, is a tool for processing, quality control,
        and visualization of targeted metabolomics and lipidomics mass
        spectrometry data.
License: AGPL-3
URL: https://github.com/SLINGhub/MRMhub,
        https://slinghub.github.io/MRMhub/quant/
BugReports: https://github.com/SLINGhub/MRMhub/issues
Depends: R (>= 4.1)
Imports: assertr, methods, cli, dplyr (>= 1.1.0), tibble, forcats, fs,
        glue, lifecycle, lubridate, purrr (>= 1.1.0), readr, rlang,
        scales, stringr, tidyr, openxlsx2, ggh4x, ggplot2 (>= 3.5.0),
        ggrepel, ggnewscale
Suggests: enviPat, qpdf, pdftools, ggvenn, patchwork, ggbeeswarm,
        ggpmisc, covr, ragg, svglite, fansi, lancer, rgoslin, knitr,
        ggExtra, MASS, mgcv, ranger, rmarkdown, sva, bibtex, here,
        testthat (>= 3.0.0), callr, vdiffr, withr, xml2, mirai,
        carrier, shiny, bslib, shinytest2, rmzTabM, DT,
        SummarizedExperiment, S4Vectors, lipidr
Remotes: SLINGhub/lancer, github::lifs-tools/rmzTabM
VignetteBuilder: knitr
biocViews:
Config/testthat/edition: 3
Encoding: UTF-8
Config/roxygen2/markdown: TRUE
LazyData: true
LazyDataCompression: xz
NeedsCompilation: no
Collate: 'build-workflow.R' 'calc-calibrations.R' 'calc-eda.R'
        'calc-istd-normalization.R' 'calc-ref-normalization.R'
        'calc-response.R' 'check-setup.R' 'mrmhub-global-definitions.R'
        'classes.R' 'correct-batch.R' 'correct-drift-batch.R'
        'correct-isotope.R' 'data-example.R' 'data-export.R'
        'data-import.R' 'data-managment.R' 'data-mztab.R'
        'data-outlier.R' 'data-summarize.R'
        'data-summarizedexperiment.R' 'datasets.R' 'functions-chem.R'
        'functions-math.R' 'helper.R' 'isotope-derive.R'
        'isotope-licar.R' 'lipidomics.R' 'metadata-import.R'
        'mrmhub-cli.R' 'mrmhub-package.R' 'plot-defaults.R'
        'plot-featureprofile.R' 'plot-qc-correlations.R'
        'plot-qc-matrixeffects.R' 'plot-runscatter.R' 'plot-save.R'
        'plots-calibcurves.R' 'plots-qc-cv.R' 'plots-qc-filtering.R'
        'plots-qc-identification.R' 'plots-qc-interference.R'
        'plots-qc-pca.R' 'plots-qc-responsecurves.R'
        'plots-qc-runorder.R' 'qc-filtering.R' 'tibble-classes.R'
        'utils-plot-style.R' 'utils.R'
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libx11-dev
Repository: https://slinghub.r-universe.dev
Date/Publication: 2026-10-21 20:32:05 UTC
RemoteUrl: https://github.com/SLINGhub/MRMhub
RemoteRef: HEAD
RemoteSha: 1e5c5bf27eeaff8176c69673f7afd359455aedbf
Packaged: 2026-10-22 05:32:44 UTC; root
Author: Bo Burla [aut, cre] (ORCID: <https://orcid.org/0000-0002-5918-3249>),
  Guo Shou Teo [aut] (ORCID: <https://orcid.org/0000-0003-3891-1494>),
  Hyungwon Choi [aut] (ORCID: <https://orcid.org/0000-0002-6687-3088>)
Maintainer: Bo Burla <bo.burla@nus.edu.sg>